PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g05000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 376aa    MW: 41403.4 Da    PI: 7.9926
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g05000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.3e-32230285156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v++Lt+++vkSHLQkYRl+
  Vradi11g05000.1 230 KQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVDSLTNDEVKSHLQKYRLH 285
                      79****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.02227287IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-29228288IPR009057Homeodomain-like
SuperFamilySSF466893.58E-18228288IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26230285IPR006447Myb domain, plants
PfamPF002492.8E-7232283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVVCDLWEHT LAHRKSPHPT QQHSSAFMEL SLDLSLGFVP KPISLFFADV SANRNNTDKV  60
ATLDGFVQRL EDELRKVEAF KRELPLCMLL LNDAIARLKE EKVKCSVLQD PPTSEQFVPP  120
KTNSGGSENE KCEKKNWMSS AQLWSTQKIK STNEDGDRSV PQNPINGNLC APRKEGSQIP  180
SFSLMGHGSE LSHSNSKSVC GDTSSGSSLL RVEVQSQPQP PQHMQQNPRK QRRCWSPELH  240
RRFVDALQQL GGAQVATPKQ IRELMQVDSL TNDEVKSHLQ KYRLHVRRFP VSSVGQADNG  300
SWMGQDQCGN KSKGNLSQSG SPQGPLTPLL LGGGGSAKGI SSPGRNSVDA EDEQSDCRNW  360
KGGLHQHLEA DNQSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-154AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519923.10.0PREDICTED: uncharacterized protein LOC106776956
TrEMBLA0A0S3T5I30.0A0A0S3T5I3_PHAAN; Uncharacterized protein
STRINGGLYMA01G39040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-58G2-like family protein